NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207858_1007463

Scaffold Ga0207858_1007463


Overview

Basic Information
Taxon OID3300026909 Open in IMG/M
Scaffold IDGa0207858_1007463 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 23 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1107
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NameLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037252Metagenome / Metatranscriptome168N
F068348Metagenome124N
F070768Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0207858_10074631F070768AGGAGMTDRLREYIYWLACIIAVVWLAFGVADIAIGLGRGRGINLIEVLVLLVVAIMIFGLGLGVRPRTGGE
Ga0207858_10074632F068348AGGMRRRLGNFLLLASVLIAGGWIWFAVERLGARLEEWERVFVVAGVIVLVGLALRYFLAGDEENTME
Ga0207858_10074633F037252N/AVLLFKGIENNVGVVRGSSGSQEGKIMTIRGIVCFASVLTVATVIGTSASSYAAQPCCSWVGGKYINVKSGKEVRPPKGAVAPGSVGSAASAANRYCAKPAEATAPPDCTYLSMKDCRASLKGKVGSCYKF
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