Scaffold Ga0208575_1022835

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208575_1022835

Scaffold Ga0208575_1022835

Overview

Basic Information
Taxon OID	3300026920 Open in IMG/M
Scaffold ID	Ga0208575_1022835 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN397 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	561
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Source Dataset Sampling Location
Location Name	Willamette National Forest, Oregon, USA
Coordinates	Lat. (^o)	44.20517707	Long. (^o)	-122.1284473	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F081146	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208575_10228351	F081146	AGGAG	MSDVAKVPNISTASNGAVKYFKIQVRGWTDFDPLDKKLPEIADAIERGGGFLTAVEVLDTKDDLSAISDNVVREGFQNILAARRVLRSIGELPTSLVEDLRAALNAPAETAKKPAGSQNSELAAKRAS

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