NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207783_1006392

Scaffold Ga0207783_1006392


Overview

Basic Information
Taxon OID3300026942 Open in IMG/M
Scaffold IDGa0207783_1006392 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 63 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1225
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NameLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001161Metagenome / Metatranscriptome761Y
F057634Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0207783_10063921F001161N/AGFFHNADAERMSKKDNNHTFEGCEPSILFREFAAECMELAQTTPTPEKRTLYMKMASVWHQMALRWEKKG
Ga0207783_10063923F057634AGGAGMNLMSRVAILAISAVPMYAQAQQSGMVKLKADAQNVVKIIRGDKLKTQIYCEILDLRDQIDDEHGSSKAKELSQKVDKLLEKLGPEYIALVSGLKDIDPSSQEEIDSILDPLDDLCGD

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