 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026993 Open in IMG/M |
| Scaffold ID | Ga0209975_1000008 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel4S_1600h metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 17552 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (33.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Ohio, Lake Erie | |||||||
| Coordinates | Lat. (o) | 41.69957 | Long. (o) | -83.2941 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F046201 | Metagenome | 151 | Y |
| F053094 | Metagenome / Metatranscriptome | 141 | N |
| F082383 | Metagenome | 113 | N |
| F093342 | Metagenome / Metatranscriptome | 106 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209975_100000817 | F053094 | N/A | MADATTISGSVMFIQYSDTPNGARKSAVCQSEGSFDGSRNVVSDETNCGTLKVLGPQNNRFTLNAVVDTVPDPNEASFNDFQTLYANNTKKYWHLTDSAETVYHGGYGWISALGQQNVSGQTAKFTMTIEIEGDIDTTPAS |
| Ga0209975_100000818 | F093342 | N/A | MKQITHTIGGKDVTLDVGKMWFSKFYGEATSSDPLLMSELLSKPDKQFDFICGLVYGGLNCYNKVNGIKETVSIDQVQEWVGSMDEADAAALINKFVEVNKPKEQGEAPAQVANP |
| Ga0209975_100000819 | F046201 | GGA | MRSEAFGQIGLLPDAFYGLEVEDYLLLRRGYIDKVKNESVLLRFQTALICEALIGKGNGARFVMDSWQLESKTELDQQQIRALLKAKREKEALKRLKMNQNG |
| Ga0209975_100000822 | F082383 | N/A | MNDGKVVRGSNMIASIKVNGNYYPVFCAKSCSFELTNEIINRTSVNDGLFTKRRIRRTEWSGSASGVLVTNNDGNRYSPFYLMQESVRRASLEWQFEFTNLDGDIRTIEGEALIQNLPISGDVQSFVQCTVNIIGTGAFTMDVSPSSPTQDEDVDSDYWSTTPGAIFIGGLSTNGKSLQGKTILAIAREGTVYDPITTGSPSNRTALFNSALGRITFDSNIPFNPGETVWAMWKD |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |