NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207949_1004629

Scaffold Ga0207949_1004629


Overview

Basic Information
Taxon OID3300026999 Open in IMG/M
Scaffold IDGa0207949_1004629 Open in IMG/M
Source Dataset NameForest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF044 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1232
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location
Location NameHarvard Forest LTER, Petersham, MA, USA
CoordinatesLat. (o)42.550409Long. (o)-72.180244Alt. (m)Depth (m)0 to .1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010408Metagenome304Y
F038833Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0207949_10046291F038833AGGMHPYLLQEIARQRQEDLRRAARQYRPAGSRSRRPVTAARTIHHGGEPTRSKPMILVALLLAAFRSA
Ga0207949_10046292F010408GAGMFTQFLGTAATVYGVLGALKTLLQARQMLARRTSGDVSALFLASYAGGYAIWLAYGLSTGSLPLIVVDTAGLFCGGLTLAVALSLRGSLSRPATWSSCP

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