NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207722_1013045

Scaffold Ga0207722_1013045


Overview

Basic Information
Taxon OID3300027003 Open in IMG/M
Scaffold IDGa0207722_1013045 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 26 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)951
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NameLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005719Metagenome / Metatranscriptome392Y
F007338Metagenome353Y

Sequences

Protein IDFamilyRBSSequence
Ga0207722_10130452F005719N/AVNDIDLTRDEIWFLKALRAAGERGRIVSAFASNAGLARLVEMQYVTKQPQSERKMLYVITDRGRQALASAPQ
Ga0207722_10130453F007338N/ARAPTKKLMSVIAGRSFWNSHRVPHAVSRFQDWTADVAEPKVRLCGRFCPISKVCQEIGDLSGPLPEAILSILYKETKAGDDMLALKLDETYRGAGRHLQRLIERRKDEIRRRKALKSQQLNHKSGRE

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