NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209093_1000114

Scaffold Ga0209093_1000114


Overview

Basic Information
Taxon OID3300027009 Open in IMG/M
Scaffold IDGa0209093_1000114 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41154
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (78.85%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameSidmouth, United Kingdom
CoordinatesLat. (o)50.677Long. (o)-3.24Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078158Metagenome116Y
F098555Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209093_100011413F078158GAGMVSSAAPDAPAAMAVDREAEGAGAFLGPEEDIEDDVLANLLSASWPTPAVVDDKYGRYPWTPLGGSIVEQRFDAVDSRRMTAIWTTIRGMYDTLYAVPEGTVTDFPFHRNREDWRVCQVLLHLAVRGIPPEVGDKPHFSWEYYPGSPLKLKEVDCAGCDGGVDGSHLPPPSHAV
Ga0209093_100011431F098555N/AMERAVDKAVSKIDFTVAGRIGKKKEYKVALNRKLRNVCNRRQNATRLMIYRKIGVYLDAGVPQATIQPLQVLRGNEDQLAPASAPVSDRVTRYQLVLDDSDARATCFLHLEATAASIIAEFLCVDPGDITAGTRAAGAHHIKSYIEKNEMPKLFRPDSADVRNAVVQCICDELKDIAASQFNPSDDEEADKKNPSDCHMLEGLLFLLFSICFLSLCTFIILIDLFFLIAPKTVL
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