NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209093_1000141

Scaffold Ga0209093_1000141


Overview

Basic Information
Taxon OID3300027009 Open in IMG/M
Scaffold IDGa0209093_1000141 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36979
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)53 (82.81%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Rhodophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameSidmouth, United Kingdom
CoordinatesLat. (o)50.677Long. (o)-3.24Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061494Metagenome131Y
F066406Metagenome126Y
F068389Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0209093_100014139F066406GAGGVSAASRPPTRANKLPVTQLVFVARGVFRRSTPCVCALRGFLPGRIFRDRTTRRHGLARLPPDCLGLAGRVLTIGGAAGEEGDSTFLGVVALHQPASGGT
Ga0209093_10001415F061494GAGVCVAFPGRDYNLPTRVGIRTFYLVATPSFLVVRVSRFAWLLSASDHYAGPDVLSGGDVTPAYVDGHAPGSVRGWDTWFLGLGSAPADAG
Ga0209093_100014163F068389AGGVSGQFEVLATDERTYLIDQDGLPYRVSGDHVVPAGPMDAGNRPKQPQVAVPDALQQGGSKFVFERFVDHTWDEEGVLWLLVRWFGYGPEDDTWQHLGRLPVAAVYPYCRRTGLLPQDPDKVVPLWENNEQL
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