NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209093_1000241

Scaffold Ga0209093_1000241


Overview

Basic Information
Taxon OID3300027009 Open in IMG/M
Scaffold IDGa0209093_1000241 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28397
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameSidmouth, United Kingdom
CoordinatesLat. (o)50.677Long. (o)-3.24Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027093Metagenome195Y
F053751Metagenome140Y
F066406Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0209093_100024117F066406GGAGGVGTDGLRGRDASVTSIPSTRASKLPVTQLVFVARGVFPWSTPCVCALRGLLPGREFPDMTTRRHGPARLPPDWVGLAGRLVTCDGAAGEEGDSTLLGVVVVRQPASGGT
Ga0209093_100024119F053751N/AVVPPKIAVNHPYCRIMFDCETYALENKSVYHTRRRARTLGRRKQDAAQFFGVHDEWDSSPPAKVLQLLRKFSKACDDNDISEGKALYILQDFTKEPFKSGVRMVLPTRRAGNPGEITSYLELINWMLRRHVDEASVATLFETLSVAFQRDDEKELSFAERLRRHNTECGFMHGEGALKGRFLEGVYRAARATVRERNTPGMTMAELARVAQTKGDEHRWLPLEQLEERTQVR
Ga0209093_100024122F027093N/AVDPTRGADVMPVRLQSRSKGIRLRDAHLPKGLEGRNVVAILTGSKFQVASPIWLHAGRELALLVIVDTGSGVSLVREALLPPEMKVAPLDAATAQLFDVNGGLLPITGTGTLTVRVGTYSRPVTCGVVRGMSIPPILGTDYTDVHVPNICGPKGYIQVLDECKVPILRRGKTVSYAKAHQPGKAGAASESDAKVRLAREVVLLPLSRGYVPVQTLFQGNGVSTQRHQVYERHRVHVATATMHCTANQT
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