NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209093_1000581

Scaffold Ga0209093_1000581


Overview

Basic Information
Taxon OID3300027009 Open in IMG/M
Scaffold IDGa0209093_1000581 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20141
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (78.12%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameSidmouth, United Kingdom
CoordinatesLat. (o)50.677Long. (o)-3.24Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013163Metagenome273Y
F061494Metagenome131Y
F068389Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0209093_100058112F013163GAGGMKKQLIQGLPEYLLTDAFVYNEAQRSYQQLSTYVAGKYLAAKAVMALANLGSRGGSSRKGTTSTGPRGLSVNHLHSPWEEDGTATHDMVAVLSSGTPGFHTVGEAPYSRREAPTGPPLCYICWTRAHRVPDCKILMDKQRDIAKAARSTFLRQRTGGEGTAPDRTAVVALLWEDLFGGADSRKTEGGDVPPVATPSKGRRVEGNAWGGWPRHPPQLPLSAPTLRLTPVVSRFPPRR
Ga0209093_100058119F061494GAGVPARDYNRPTRVGIPTLYLAATPSFLVVRVSRFAWLLSARNHYADPDVVFGGDVAQAYVAGHASGSSWGWDTCFFGFGSTPADAG
Ga0209093_100058129F068389AGGVWDSISTTRARYNRDYKKKVSPRRVSVTSGDWVYLRNYTRKHKLDPKVTGPDEVLETDGRTYLIDQDGLPHRVSGDHVVPAGPVDPASRPKQPQMAVPDALQPGGSEFVFERFVDHTWDEEGVLWLLVRLFGYGPEDDNWKRSGRLPVAAVYRYCRRKGLLPQDPDKADPGRNAQAA
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