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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027009 Open in IMG/M |
| Scaffold ID | Ga0209093_1000992 Open in IMG/M |
| Source Dataset Name | Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male1 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15962 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (68.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sidmouth, United Kingdom | |||||||
| Coordinates | Lat. (o) | 50.677 | Long. (o) | -3.24 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F018310 | Metagenome | 235 | Y |
| F022581 | Metagenome | 213 | Y |
| F052353 | Metagenome | 142 | Y |
| F061493 | Metagenome | 131 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209093_100099212 | F018310 | GAG | MWCLVWGRRPWGRGNMVTIDSSLFAIHVYDVGRIICVQDDEWADGPALLLVLLLVVRREDLVTDADTFVTCINVRVEVTLIALLRLLQGLHDVRNLLS |
| Ga0209093_100099216 | F052353 | N/A | MSRVPFPGFPGASSPTGERRKVTRILSPAHRHYEIAATIGPCQRAMHSCRPVLDTGAGINLVRPNVLPANWQIYAEKLERTPRMKDANNNSLITNYAIHLYIDFGCAKVFDRFFVADHLSVPCILGTEFMDNHVEAIFTRLKKVVWQDHVGDVTRNLRRAPILATLRANKLERSWEDQPANVRACRQVRVKGRMEEWVMATCATLGLVTISPNIRLCRQVSGRRPWRCTG |
| Ga0209093_100099219 | F022581 | N/A | MLHQQRFFFFASKAIAFALSRVYGRSPFTGYLTNVINPTFGGAAGDTLDCRVHLHAVPESCPLLPSGTVTGIAPIGLTRGARLPLAYATTLGVAGGDLQLERGALLLALCRLRNDPWWCRRATWQWEG |
| Ga0209093_10009922 | F061493 | GAG | VRTGNLLWARGGKRVSTGVAPSPRRPVDPTRGADVMPVRIQSRPERIGPRDAPLPKGLDGRNVVAILTGSNYQVASRIWLEAGRDLALRVIVDTGSGVSLLLEALLPPEMKVAPLDAATAQLFDENGGLLPITGTVTLTVRIGTYSTQVTCGVVRGMSVPLLLGTDHTDVHVPNICGPKG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |