Scaffold Ga0209093

Basic Information
Taxon OID	3300027009 Open in IMG/M
Scaffold ID	Ga0209093_1002088 Open in IMG/M
Source Dataset Name	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male1 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027009 Open in IMG/M

Scaffold ID

Ga0209093_1002088 Open in IMG/M

Source Dataset Name

Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male1 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11284
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (73.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

11284

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (73.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Ecosystem

Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location Name	Sidmouth, United Kingdom
Coordinates	Lat. (^o)	50.677	Long. (^o)	-3.24	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Sidmouth, United Kingdom

Coordinates

Lat. (^o)

50.677

Long. (^o)

-3.24

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F029971	Metagenome	186	Y
F038959	Metagenome	164	Y
F040447	Metagenome	161	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209093_100208810	F040447	GGCGG	LAVLECPDDRFAGVLDYGSYRRRSRHLTHGASQARKMGRTAKNMKFSFGGTPMFNGKEPLKVFSWLRKFVKACDDNDVSEGMGLYLFPNFLGGDAETRFTRNLPGSDVGGGRGALGTCPTAVNWLLSSDAEPHALGLAQDKFSRATLGDKKGVDAFAARLRSLAELCGNIHSEGTMKQQLIQGLPEYLRTDAFVYNTSQRSYQQLSTYVAGKYRAAKDVMALANRGSSGGSPRKGQTSTGPRGLSVNHLESPWDEDDAAPHERVAVLPSGTPGFRTVGASPYSQREAPTGPPLCYMCWTRGHRAPDRKILTDKERDVVRAARNNFMRQRKRGADPAQDRTSVVALLWGDLLGGAEATRTDGRDAQPVETPAKGRRGAGHA
Ga0209093_10020883	F029971	N/A	VTAAAGSSTPGPSQPVVLAAPSAGNSTGSHIVSFEPVEHRDIFDAAFDQLYNVPSDRVPQGLARGVACDPGELRGYTTGTLMAGMCHTVVSLCESIGQGAHDNPGVPPRQMEELLQLVGRPGIRAAVLRETGAAAGGASRRQQHQRDRDVYREEPPAQSSRGPSGHGWGGPASGQR
Ga0209093_10020884	F038959	GGA	VAAYGPPATVLSDNGPQFRSTFFQGVCSQLWIANRYSTTYPSQTNGQVDRYNRNIVGQLQTYVEDHQNRWDDLVSMLTLAYNSRPQQSPGVAPLEFVTPERVRGLSEERMVGSPAPEDTDGSPRVIREAIRARLRNLIHKVRRSLSVAQRRNKRSYDARVRPVNKQIQAGDLVFVDGHARTKHKLETRAAGPHKVLSRGEGTFSLDTGGYPETVSSDHVTAAPNLPGDPQKLIQSLGVPQDVVEPEGQQHTGKEFVWEAFVGHEVADDGMLRLRTRWWGYHPDEDTLELASRLDLRKVHRYMRRVGLRVEEEVAVVDFLA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209093_1002088

Overview

Ecosystem & Geography

Associated Families

Sequences