NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209093_1003254

Scaffold Ga0209093_1003254


Overview

Basic Information
Taxon OID3300027009 Open in IMG/M
Scaffold IDGa0209093_1003254 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8564
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameSidmouth, United Kingdom
CoordinatesLat. (o)50.677Long. (o)-3.24Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026183Metagenome198Y
F029971Metagenome186Y
F040447Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0209093_100325410F040447GAGVSEGIGLNLIPNFLAGDAKARFTRNLPGSDIGGGQRALGSFSAAVNWLLSTYAEPHALGVAQDKFCRATLVDNEGVDAFTASLRSLAELCGNIHSEVTMKQQLIQGLPEYLRTDAFVYDTAQRGYQQLSTYVAGKYRAAKDVMALANRVSPGGSSRKRQTSTGPRGLSVNHLNSSWEEDDTDTHDMVAVLPSGTLGFRTVGAAPYSRREATTGPPLCYRCWTRAHRVRNCKILTDKQREIVKAARSTFVRQRNGTAGAAPDRTAVVALPWDDLLGGAESTRTEVGDVPSVATLCKGRRGAGNA
Ga0209093_10032543F029971N/AVTGAAGLSPAGPSSSAPPAAPSVGNSLGNRIVSFDPVEHRDIPDAAFDQLDHVPSDRVPQGLARVVACDPGERRGSTTGTLMACLCHTVVSLGDSIAQWARDNAGVPPQQVHELLQLVGWRSARADPHRETSVAAGGMSRRQQHQRDRDVYHEKPPAQRPRGPPGHEGGVPLSGRR
Ga0209093_10032544F026183GGAVLIPGEGMFSLDVGGYPETLSSDHVTSAPVPPGDPQTLLQNLGVPQDVVVPEGHQHTKNEFVWEAIVVHEVAEDGTLRFWTRWWGYHSEGDTLELASRLELRKVHQYIWRVGLRVEETRSVVDFLA
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