NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207740_1025415

Scaffold Ga0207740_1025415


Overview

Basic Information
Taxon OID3300027011 Open in IMG/M
Scaffold IDGa0207740_1025415 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 29 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)751
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NameLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052138Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0207740_10254151F052138AGCAGGMGKLALVIDRRLFQRLLLHMGGFLLVFVTALWLRQLIPKPDPILQGYLQITTGLFAFVFAAVALVRFQGTQDRVSLILGSGFLLSGATLTASSILFFQLIHENQIWVLWAPVAWWMSRLLLALLFGVALLVAHFIPRSRHPRLEIAGALFAVLSLTYLITASLRKLPPDVARHPDAFIPNPLHLVPAVIFLMALYGYRHR
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