NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209295_1002427

Scaffold Ga0209295_1002427


Overview

Basic Information
Taxon OID3300027028 Open in IMG/M
Scaffold IDGa0209295_1002427 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Porto, Portugal - Porto_5 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6578
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Rhodophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NamePortugal: Porto
CoordinatesLat. (o)41.162Long. (o)-8.622Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009942Metagenome310Y
F052353Metagenome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0209295_10024273F009942AGCAGMAGPIFTECARMARKRTIGALVFLRLSENLEENLDNRLLWATLSHETTEKGRISQENRESRFCTDLAVGEPMARRRFVLSSCLLLF
Ga0209295_10024275F052353N/AMSRVPLSGVPGASSPTGERRKVTRILNPAHRHYEIAATIGPCQRAMHSCLPVLDTGAGINLVRPNVLPANWQRYAEKLERTPRIKDANNNRLIESYAIHLYINVGGTKVLDRFFVAEHLSVPCILGTEFMDNHVEAIFTRLKKAVWQDHVGDVTRNLR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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