NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209295_1002616

Scaffold Ga0209295_1002616


Overview

Basic Information
Taxon OID3300027028 Open in IMG/M
Scaffold IDGa0209295_1002616 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Porto, Portugal - Porto_5 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6313
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NamePortugal: Porto
CoordinatesLat. (o)41.162Long. (o)-8.622Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027093Metagenome195Y
F075609Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0209295_10026167F027093N/AMPGRIHSRPKRIRPRDAPFPKAMDGRNVVAILTGSNYQVASRIWLYEGRELALRVIVDTGSGVCLVRQALLPPEMKMAPLDAATAQLFDVNGVLLPITGTVNPTVRVGAYSTPVLRGVVRGMSVPPLLGTAFTDVHVPNICGPKGYIQVLNGCKVPILRRGKTVSYGKADRPCKAVAASETDAKVRLAREVVLPPRSRRYVPVQTSFQGNGVNTQRHHVHERHRVPVSTGTMDCTANQTWWVEVNRTGSPSTRLPKGMVLGHM
Ga0209295_10026169F075609N/AVVTAYDSQVHGSTGRVPFAFVIPRRLTPVAIERLTAGTDTGEIVTPGPAKENFLQRLDALIPLVWDNMDKAQARYRRAFDKRVQARREALRVGDWVFVKSHENQGGKLVFKTPGPYQVLRTDGRRLTIESDDGIRTINGNHATRAPEPPEGDPAWARALAEWQVPSLPSSASKPIEAVFDHFS
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