NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209295_1035113

Scaffold Ga0209295_1035113


Overview

Basic Information
Taxon OID3300027028 Open in IMG/M
Scaffold IDGa0209295_1035113 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Porto, Portugal - Porto_5 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1176
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NamePortugal: Porto
CoordinatesLat. (o)41.162Long. (o)-8.622Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068389Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0209295_10351131F068389AGGVLETDERTYLIDQDGLPYRVSGDHVVPAGPVDPANRPNQSQVAIPDALQPGGSEFVFERFVDHTWDEEGVLWLLVRWFGYGPEDDTWQHSGRLPVAAVYRYCRRKALLPQDPDKAEPGRDAQEA
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