Scaffold Ga0207855_1008065

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207855_1008065

Scaffold Ga0207855_1008065

Overview

Basic Information
Taxon OID	3300027039 Open in IMG/M
Scaffold ID	Ga0207855_1008065 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 14 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1530
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location Name	Luquillo Experimental Forest Soil, Puerto Rico
Coordinates	Lat. (^o)	18.0	Long. (^o)	-65.0	Alt. (m)		Depth (m)	.1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008645	Metagenome	330	Y
F013577	Metagenome	270	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207855_10080652	F008645	AGGA	MHCPSFAIYRPSLSRLSCRLLSSAAIVGLSLLLIAATAAAAKPCLTKEQARKLWPSEWLYWHTERHCWDRIKGTSGTYDERQPEPPPSSQLQAADVIHAPLPKQLTMEEKKLPEPEILYPAVLINKSNILETVPLTVKLPWLSPHSILGWPLLIDVDRPAFREWEKRIGNE
Ga0207855_10080653	F013577	AGGGGG	MRTSTDCTSRADECRRLAKLAAKSEDWQHFIEMAATWDMLAKQRPSDKLAETWALADAIANSRNLGLQ

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