NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207766_1001173

Scaffold Ga0207766_1001173


Overview

Basic Information
Taxon OID3300027042 Open in IMG/M
Scaffold IDGa0207766_1001173 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 68 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3811
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NameLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007078Metagenome / Metatranscriptome358Y
F012485Metagenome / Metatranscriptome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0207766_10011731F007078N/ADDEARRIPWQRLYDVRNQYIDWQAFYLWVRSILEVEDGIPNWLVEILNDRCAGFLETQKALPPKAVKARPLALRLEDWIEEHVFGFAKREGYFFAISYYAIRDPRYQRAEVCWSECVDRWKKARPVRYPSFEEWTALAEQCDETAHLVAGERKARASVKLVEPGRLSEAVARYIDYEALAYWARPALEGGSELPPEVVRELERRCPGYLDARLKACARASSGGAQDWEHLMLWVGDRFFQHAKAEGWFDAILIQVRSHPRAIRTMEFADHCDGLWDDKLPSPYPPFEDWRREADSFVDLD
Ga0207766_10011733F012485GAGGMPSPDLNPDWVLSNSSSENKAQPHQSDAELTAVASRLWPRVQAHARREFANGNSDDRVVLAAEVWEGVLQSVSKTLQRRNGKGPGIVDLEAYLFGAFHHRFNRALKKERRRQETIELVPSTRDLEQLPGTRDAKSSRDLEHSIQVKEVVQNMDDWTRRVWTAKQYGYSWREIAEHVGLGEQAAKARFHNALRKLAARLGYGK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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