NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207796_1003826

Scaffold Ga0207796_1003826


Overview

Basic Information
Taxon OID3300027057 Open in IMG/M
Scaffold IDGa0207796_1003826 Open in IMG/M
Source Dataset NameMarine sediment microbial community from Union City, CA, USA - Pond 1C Sediment 1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3815
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location
Location NameEden Landing Ponds, San Francisco, CA, USA
CoordinatesLat. (o)37.569083Long. (o)-122.103267Alt. (m)Depth (m).32
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092306Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0207796_10038263F092306AGGAGGMTTIFYSGPDVQQSSEPHTFVEVQESDCWPVDDRSASGTKDQLADGLHPVIAIGGRTAADGRPFNLTGVVVSCNISTAGTATDRIVVNIADGTIVRNYVANILTYSGGSAATYETAPVMGQPVFVDDSADLAAGVTLSMSPLNSADVRNPLAGYLWYCQDEIADGQVGGSRSTATFDTALSDSLVEQTYCVLLINAARELA
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