NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207796_1026162

Scaffold Ga0207796_1026162


Overview

Basic Information
Taxon OID3300027057 Open in IMG/M
Scaffold IDGa0207796_1026162 Open in IMG/M
Source Dataset NameMarine sediment microbial community from Union City, CA, USA - Pond 1C Sediment 1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)950
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location
Location NameEden Landing Ponds, San Francisco, CA, USA
CoordinatesLat. (o)37.569083Long. (o)-122.103267Alt. (m)Depth (m).32
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021885Metagenome / Metatranscriptome217Y
F049303Metagenome / Metatranscriptome147Y
F090093Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0207796_10261621F090093GAGGMNIRTIVVIACLYVSFFGLPNIELPNVQPPAPETPDVREPTAELRDAVQDVADICEKMDAFDRLVWMSTWEECSTIVAGEDDDVSLVFDNTLGLRLFTDSTFDVAWSRLANASQKYRGLGEAVEKAFTQVIGNDV
Ga0207796_10261622F049303AGGMSTLINDPVRVLAVVAAAAVLLAPYLPAVLKRLKAAWASLPSVPKTPPDGIGVSDLTMVLDLANRLRLDGHEKATDLAKQLLDAMLEVPQK
Ga0207796_10261623F021885N/AMNIFEKLKLLAEWSPLLTFAQQLAAEDDIHAKAVIVTEAMEWVADRTSVEWDDELASHISDILISEEGEAFVRWILERMQVSDVDVD

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