NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208365_1002477

Scaffold Ga0208365_1002477


Overview

Basic Information
Taxon OID3300027070 Open in IMG/M
Scaffold IDGa0208365_1002477 Open in IMG/M
Source Dataset NameForest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2101
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location
Location NameHarvard Forest LTER, Petersham, MA, USA
CoordinatesLat. (o)42.532967Long. (o)-72.180244Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049197Metagenome147N
F082329Metagenome113Y
F094334Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0208365_10024771F082329GGAGMIDQDRAKLQLAAVVGAVLGIITGSLAGSGWFIVLIWALIGAVVVSGMVYCLRAFR
Ga0208365_10024773F094334GGAMSRLLIAAILIISTMPLAAQGQEPDSAKLKAAAQKVVSIINGDKAKTQTFCQMAIVGKQVDEAIQEKDNKKAAELAQKLTDLEKNLGPEYLALVDALRNIDLNSKEAQEIVSTFDTLDASCPH
Ga0208365_10024774F049197AGGGGGMVREEARRTLLREYDIWAKDHPDDVTKRGGVVFFTYLQKERSHLLDFHAVGGDKWATVHGWLYYTGRVKD
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