NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208237_1008815

Scaffold Ga0208237_1008815


Overview

Basic Information
Taxon OID3300027080 Open in IMG/M
Scaffold IDGa0208237_1008815 Open in IMG/M
Source Dataset NameForest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF009 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1473
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location
Location NameHarvard Forest LTER, Petersham, MA, USA
CoordinatesLat. (o)42.532967Long. (o)-72.209488Alt. (m)Depth (m)0 to .1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039236Metagenome164N
F066222Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0208237_10088152F066222AGGAGGVTEVNISDIEALADFRSHLTEFNRDLSESFKAMRTHWRELGEVWRDDMYRRFGEALEEVTPGVDSYLAATEGHEAYLLALVERLRAVRELSAG
Ga0208237_10088153F039236AGGAGMTPMPAQAPTTALSPYLSLRQAVRPAIVTYTVLASEQERAGALAEEASQLLESTRELLEAVGLVHLLSPDPGAEIPGNDRGDRQARLLAAYADAGVLWAKVVGHSIALADGLLSQARWHDVLRLADFLDNAGETVVADSLRERANDAIRGEYYARISCIHDKMSREETATAIDTLRSLPKEFPERKLEIALRLRPLGASVKNVTKLDRQSRSTVEAAMSSLPDSADYYLAVLSEIYYSFV
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