NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209367_1013498

Scaffold Ga0209367_1013498


Overview

Basic Information
Taxon OID3300027098 Open in IMG/M
Scaffold IDGa0209367_1013498 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius geniculatus LIZARD ISLAND.2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10495
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameMax Planck institute for Marine Microbiology, Germany
CoordinatesLat. (o)51.321602Long. (o)12.394572Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007256Metagenome354Y
F095018Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0209367_10134982F007256N/AVPLGVEMEGCLCTVGQVVHTLPEGEPVGGVTSLAGEIYVLRDKEHDEVEVYEAISYRLQRCLTVPNIRGLSDMAASEHCFCVYIGDHLSCCIHRLGAQGAATQWPVNDKPARLSVNAAHNVLVTCPYVRKIKEFSSHGNLLRELTLPDDVITPWHAIQIRSGQFRVCHGGGDDTVHRVCKMS
Ga0209367_10134983F095018GGALAVGDSEFVFVVDIGNRGVTLLSPTLGYIRQVVCSDDLKVYPSRPCLDTQRRRLYVADNKWDDEEGIFTTGRVVFFSV
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