Scaffold Ga0208488_1000013

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208488_1000013

Scaffold Ga0208488_1000013

Overview

Basic Information
Taxon OID	3300027110 Open in IMG/M
Scaffold ID	Ga0208488_1000013 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	16526
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (69.23%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location
Location Name	Harvard Forest LTER, Petersham, MA, USA
Coordinates	Lat. (^o)	42.532967	Long. (^o)	-72.209488	Alt. (m)		Depth (m)	0 to .1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042452	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208488_10000137	F042452	AGGAG	MKNERHFDSPLFALAVAGLATLMLIACQQTQQVSVPATAEPKPPAGKDVYVVFEGPWAFAADPKDVNSVIALAPKTKSHRELFAQTWDKTLAPGIYELSLPPRTGTAAGTIDSNILVTKIDPQSAQRALDRKSERYAIRVPKPDAYLEATHYRSRVDAKYPPDPSSEKDYVTSISLRYSVATLTGFSLAGTPDSGNFNPLLLSVVTPVIHFGIAPLHDPDPADKCHTHAREAFRDLTRLINVSLYVDFPNDPDGCHSKDPQNVHPVAAVLPRVSSFLARHSSGVLKQHLLAVIYFFGSYQNCEGPGIVGGG

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