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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027114 Open in IMG/M |
| Scaffold ID | Ga0208009_1000033 Open in IMG/M |
| Source Dataset Name | Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 36863 |
| Total Scaffold Genes | 65 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 59 (90.77%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Ohio | |||||||
| Coordinates | Lat. (o) | 40.178 | Long. (o) | -81.073 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F025013 | Metagenome / Metatranscriptome | 203 | Y |
| F025745 | Metagenome / Metatranscriptome | 200 | N |
| F048311 | Metagenome / Metatranscriptome | 148 | Y |
| F088888 | Metagenome / Metatranscriptome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208009_100003329 | F025013 | GGAG | MDNVTLVEIESVGIVETHVVIDHGDGSFTSMLKTTYDEMIAQQEVTKPLL |
| Ga0208009_100003343 | F025745 | N/A | MPANAPTLTVSFSNGGAFTAVSADLLLSVEIRRGRQYQNDFLEAGTADVVLNNQSGAFDPSNTSSPWYGILIAGMQVRIQGNSTTIFTGYLENNEVNQGIYPTVSLTFVDGLAQIAKAIAPALATSSFQETASARATRALDLAEWTGGRSLTGTTVMQKTKQNMSCLEMLEQCANCVGGRFYVSRSGVATLVPLADKFSRPTRLLFSDQGDANSVGYDGIITNPGTDYVYNEAIVFRGPKKTQKTAKFTSSVSTYGLKSKKLDAPIFDDTSAANLALYAARKDADAVVLAEQIDFTAIGIGVLATDMLETELNDLVQVKRLTYDGRNITINCVVEGLAHSITADNWRVSYFTSVVDPYTITI |
| Ga0208009_100003345 | F048311 | GAGG | MDNQTELDINVVIAVLREQIGLLALDKAMLTARIGDLETKLKEKNDCE |
| Ga0208009_100003359 | F088888 | AGGAG | MKLTKRGKRVRAVLILIGLWAWWKISGNLWWVEDHYCWGEMVECYFPK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |