Scaffold Ga0208009

Basic Information
Taxon OID	3300027114 Open in IMG/M
Scaffold ID	Ga0208009_1000085 Open in IMG/M
Source Dataset Name	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027114 Open in IMG/M

Scaffold ID

Ga0208009_1000085 Open in IMG/M

Source Dataset Name

Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25079
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (68.42%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

25079

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (68.42%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Ohio
Coordinates	Lat. (^o)	40.178	Long. (^o)	-81.073	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio

Coordinates

Lat. (^o)

40.178

Long. (^o)

-81.073

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001900	Metagenome / Metatranscriptome	620	Y
F005053	Metagenome / Metatranscriptome	413	Y
F005054	Metagenome / Metatranscriptome	413	Y
F005479	Metagenome / Metatranscriptome	399	Y
F071173	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208009_100008510	F000258	GGAGG	VTANYKLDAMLELRKYLWEELSSRDIFDADDYWSDNLNENIVPIIPVQQAPELNQFMSGKKHIVYDKIGMSYDDNWLICCEQILFTVYSTAVAEINEIRNYMTDEFRRMDESARDINRWAGLSDKFKFHSVHIADISPTAPSEELQGFFSSEIILEIKYSRDTDTNGASSTLGRFL
Ga0208009_100008513	F005479	AGAAG	MPELVNTLKALKKKDYDSKKFQASLAGVDIGEYEEEKKTSSFDEIQLRAAGITASADDVVSLQGRFAADAGFGIGAGLGYVKE
Ga0208009_100008515	F005053	GGAGG	MPMILPRGSVLSIEAKDLLATPEGTTKIWNKITEHNRSDIGISIERIEKAVRTSNGTLRKNHVADKRRFSLSWTMLPSYRTLTVDGAWGAEDLRSFYLSDDGKKEFNIRLNLAKGGADTSSSGALYTPNMAKTSSELYTVVFGGCNFSVVKRGLQPHWNISIELEEV
Ga0208009_100008518	F071173	GGAG	MITKFGKRFLTSYLSGNNDFASRELALGIGSSTPNVKGNDTKLDFEFYRLPVELSGFNILQSGVDVDGDPVYSYFVTYKSTIPQDVSGVVSEVGLYPGDRQSFNNFDSKFITSFTNEFNWFNGSDNPTSQGNTQDASGNYTFLSKVSDSMIKVDVSSGQTKEYINSLISDDISGYSINDTISIAYKKADNNLSKIRVKFYSSDLAYYYVDFTPLSGTGDRIQTLTLNNLFSNYTAAPNLPDPSSIIKIGVATTASGGNTTVYFDAIRINDEDTFDPGYGLISRSVLSTPLIKKAGRPVDIEYKLQLDF
Ga0208009_10000857	F005054	N/A	MAEILINSQSPIVHQIFWNGDIAVADALPIVKIYDVTLDARVSPAVLPTTVLATITSTLDENNPGTYVVNVPYALTNRNKTLKVNWEYSVGGVAVVRSDEVQVVTPYIDFNYIQDLGYSTDSSDPSYKSYKELIRAERYARKQIEEYTGQKFYLYDETLTVYGYEYDTLPLPAKIYQLHTLSVNDILLRDNINNIDNWNFPVQISESGYSIRINRAGMVDNTVYTANGMVPPSIHDYSGVFHSGVPYKVFARFGWEKVPENVELATAELMKDYFSKDTIWRNKYVKSISTFDWDFEYTGDAYTGTGNALADNLLADYVLTIKAEII
Ga0208009_10000859	F001900	GGA	MLIQAASGLERMMYSNQNGPLKDSTVAQISAYVYYEAAVISKLTTNRAFQNSFGKLMFDQINLDFGNYIDALARSKPKSLHHVYEWKKTGNKSARLFKLNKGVQVGLSFSINYQFLPSRTIVPSSNGKRRHMFIDKASVMERGEPLVIRPKNAERLVFEIDGETVFMPKGASVTVKRPGGSAARNQFTLAHSRFFSGNLINDSIKRSGFQRLFNSSITKALGVPSNIKRVQYSFSANTIRSQADSALTLAFGGAM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208009_1000085

Overview

Ecosystem & Geography

Associated Families

Sequences