Scaffold Ga0208009

Basic Information
Taxon OID	3300027114 Open in IMG/M
Scaffold ID	Ga0208009_1000110 Open in IMG/M
Source Dataset Name	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027114 Open in IMG/M

Scaffold ID

Ga0208009_1000110 Open in IMG/M

Source Dataset Name

Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22843
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (82.05%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

22843

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (82.05%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Ohio
Coordinates	Lat. (^o)	40.178	Long. (^o)	-81.073	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Ohio

Coordinates

Lat. (^o)

40.178

Long. (^o)

-81.073

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000376	Metagenome / Metatranscriptome	1216	Y
F001464	Metagenome / Metatranscriptome	689	Y
F002501	Metagenome / Metatranscriptome	553	Y
F002622	Metagenome / Metatranscriptome	542	Y
F005000	Metagenome / Metatranscriptome	415	Y
F008245	Metagenome / Metatranscriptome	336	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208009_100011010	F001464	GAG	MAGENRQRLRKKFVYFFLNGKVHKVLRLSRAKDEVVAWSYLDKKRMLYSYSQVDKHMEKAYTVAEASKILGRHKVTIEEYILQGKVKQPQRVYPISNPESTWSKYMLNEANILDIHEFILDAGHIRDLPSRSELQALLKHNLIMYTKTEDGKFVPVWKAE
Ga0208009_100011014	F005000	N/A	MRILLQMTHRRIKRFQIDVEFHDNAQLISLRPQYENLLIQDMRGKGYVRVLDIDPAFSVDFTGETWKFLMSIHGVYVGKKKAWQSEGITQGKSIPRTTRQTISKPS
Ga0208009_100011022	F008245	GAGG	MAEDKNTLELISQITEFNDLHEFMKDEHLDKALAIVVKLLLNPDVPSAKSPMLIMELQAMSTKFAVMASYYSTIAKDKAGTTNNNKKNVYYSLKESIDKLVDALKYVVRYN
Ga0208009_100011034	F000376	AGAAGG	MSVYQERAKECKCCGKHVPLPTTLKEYQGVILCPTSFANVIEYKRIWKSIGNRPTGSIRKHFSDYVQQVVESTIDKNEDGTL
Ga0208009_100011036	F002622	AGGAG	VSEEEDQYDADRLAYYMEIGAVTLEGMDENGELIYAISEDAETLAPELWQSHTEYVNRSLMELYEDGLVEIEYDENLEATIHLSPEGRKIAREKGLIDMDIDWDIPND
Ga0208009_10001109	F002501	GGA	MMKCQKCGGRVFVDRVFSQKLHTELFCILCGKRWMINKETSAFGKWLEKTDRDYEKSSSISS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208009_1000110

Overview

Ecosystem & Geography

Associated Families

Sequences