NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208009_1000717

Scaffold Ga0208009_1000717


Overview

Basic Information
Taxon OID3300027114 Open in IMG/M
Scaffold IDGa0208009_1000717 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9488
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (56.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F008305Metagenome / Metatranscriptome335Y
F009882Metagenome / Metatranscriptome311Y
F034575Metagenome / Metatranscriptome174N
F035304Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0208009_100071712F034575GGAGMNSITLDPYLMKQVEMGMDGADILHGHLKTMMYEAEQIIDRCIEVEEESGEAIDSMARTEATGYFDALAEVYALTYAIAFAKEDIKNRKEVFDE
Ga0208009_100071713F035304N/AMDLNTLREYIRIHTISLEQDLQNEDGADSIVPYLEGAIHVSKHYLEMINE
Ga0208009_100071715F008305GAGGMLGYTYKDIQAFGNSLTWAIDTAKNQGDEQNYKQLLIVWDFFEGLLAEGYIEDVD
Ga0208009_100071719F009882AGGAMSVADSIIKLTKQTERSPTMSTNINDAVTIDKLEVPYNPNLLVTYKAIAGTYAAPEEPTYLTSKVTELEWDLHSARAREEALRSLQGTVRQLEDNIVEWYDPNYSKEEVLVALCELFGINPVKEIEVQGTVSFSGTISVPMSEIADFDLSNVTIDVDLSSYDYDADLRVDEVSLEDHY
Ga0208009_100071725F000808N/AYSLTTSYDGELINTLRVSDMLEAVKAWDKCVDYGFAKEYATYNLSDPTGKMYTKTFYANGEVVIK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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