NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208009_1003258

Scaffold Ga0208009_1003258


Overview

Basic Information
Taxon OID3300027114 Open in IMG/M
Scaffold IDGa0208009_1003258 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4463
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002052Metagenome / Metatranscriptome599Y
F016962Metagenome / Metatranscriptome243Y
F021758Metagenome / Metatranscriptome217Y
F047018Metagenome / Metatranscriptome150Y
F054814Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0208009_100325811F016962N/AMDMIELILAALVGILIGWSASKKVHLDGFRQLLKALKITEDDLLRAMIKIQSREWQLDDQEGSTDETIVDVKLEQQGTEIFAYRKSDDMFLAQGSNADSLIERLNQNLTPCRVVVAQEDGADLLQKNNT
Ga0208009_100325813F002052AGGAVREYQFVFNVVCASEGRPNMARVEEMIDLNMQDLVFDDEFIAALDEKQSVTIQVNLVK
Ga0208009_100325814F021758N/AMKVIKLDRRYSGHGTWTHRTNGGAWYGDDARDRGLVAFYDMRCYMTQMNGPGCFIHEAWALKKAGRTVPEWAWDTDGNVFFRDSALVNFSLAKDRWL
Ga0208009_10032584F047018AGGAGMLKLIGIAVVVYLGWITGVIQATLMITAGVLIAVAGA
Ga0208009_10032587F054814AGGAGMAEVKLNGVYKVTVTEYDCGAQRIDPNDTRFYTTLEEAKAYKAHWETGGSRECYWRAEIEQIG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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