NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208009_1021907

Scaffold Ga0208009_1021907


Overview

Basic Information
Taxon OID3300027114 Open in IMG/M
Scaffold IDGa0208009_1021907 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1419
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F000868Metagenome / Metatranscriptome853Y
F001043Metagenome / Metatranscriptome794Y
F045058Metagenome / Metatranscriptome153Y
F047650Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0208009_10219071F000868AGGAMSFLENENQMVIDAIYSDIGEQLVEDWVNSNLDEGQMYADFRFAEMSNDNYIKGRFNRHYNLTPDDQYY
Ga0208009_10219072F000450GGCGGMGDRANFGFVQPNGHTVVLYGHWAGYQMLGKLADAVIAARPRWNDSSYATRIAISQLIGDQWNAETGWGLQVNEIGDNEHKIAIIDWDQQTFSLHEEAPRNDKDNKVNGMKNTPIFTQDLSAFCEKYAMERLLVV
Ga0208009_10219073F047650AGGMAEDVSVVYYCDSCSVARASYLIKLLDGELAFCAHHYNKSKKALDEKAYEVIELNKTEESPKITEMAE
Ga0208009_10219074F001043GGAMSDYKDGFDDGYKFAREEIIEKLSEIDINDIDSWILDRLAEMMEGNQL
Ga0208009_10219075F045058N/AGLDPVAMSPLTFNIGTGSIEKVSKIRDKYNLVESYVSDYEPTGYTGR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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