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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027121 Open in IMG/M |
| Scaffold ID | Ga0255074_1000322 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8h |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7295 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (15.38%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oregon | |||||||
| Coordinates | Lat. (o) | 46.1812 | Long. (o) | -123.1834 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001009 | Metagenome / Metatranscriptome | 807 | Y |
| F003904 | Metagenome / Metatranscriptome | 462 | Y |
| F033400 | Metagenome / Metatranscriptome | 177 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0255074_10003221 | F033400 | N/A | FDGKKVKTNKLVKNLNDDIALTQAINLFREQNNMTKARNPYSWWKYVLATITYFPKGVEYNTIVRILNNVAGVTVNRSTATLLARATAGAAPCAVRREYTVRLPDLAYETKLSASFSRKTAKTKKGRPAFKFKFDNADDARDTILSSAPEMKSLFDLLDKMIHVVE |
| Ga0255074_100032210 | F001009 | N/A | MASNLNSEFNYRYQVIGNTPWEKLKTLKGFLVGRKRAAVLEQVADLKYKAKLAELKHLKELPALPHVILNLEAEILELESHLDDQAHAFELNRQEIKILENLIAELYTIVEPTRIPGYTDDQMFEANANNEFTVTIGREIQAEIIANGRPSPAKLLNAMSNPQTLESLKLVGLVPKETILLEQSDIIDALKLNNINEPKLISGSLTN |
| Ga0255074_10003226 | F003904 | N/A | MNSVIIKVKSYLWFVLLPVAILTLLSISSLKDIEQGYARFKLGRDITLYLRKSTDLLTYLGAAYTTTADKKFLDQFNDHLKEREKYFNDEVFINKILTQEELKQFRRGLDISGDLAKDVENPAFEKMDNKAFFSDKYLDYKRRIIENNQTFRDVINNTSQKIIEKEMIYLNIYLYSLCLIILGLVYLIKHDIKPVTKTKKKVKRKR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |