NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255074_1000818

Scaffold Ga0255074_1000818


Overview

Basic Information
Taxon OID3300027121 Open in IMG/M
Scaffold IDGa0255074_1000818 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4671
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.1812Long. (o)-123.1834Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001019Metagenome / Metatranscriptome804Y
F003603Metagenome / Metatranscriptome477Y
F082666Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0255074_100081810F082666AGGAMIEQAEAIDTRLQNAVDLGISGIDIMHGELKILMLVAEQELANAQAIEDETEEAMDSMERKYWEGVLDAYTELYKMTYDLSFAIGARNEATR
Ga0255074_10008184F003603AGGCGGMKTKEQQIGELLANSVEDHFFNPAALGRYLAEQPIYTIDRIVEVVAWIVEKQAERYRREVANNGTVCEGLIIANHLDKVIDKIKVTNDLKSVQLPITPKERGEFVKSLPNVQEQNYRYSWLHQTNDTNKVTIEHPFI
Ga0255074_10008187F001019AGGMTHYGASLEILEVAYEVSPGGVRTFEVYDKGDNCDIMDMPIYETESLTKAVEYCYNLGKDFIVRTYAEWEMRELLADL
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