NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255074_1000889

Scaffold Ga0255074_1000889


Overview

Basic Information
Taxon OID3300027121 Open in IMG/M
Scaffold IDGa0255074_1000889 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4479
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.1812Long. (o)-123.1834Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009140Metagenome / Metatranscriptome322Y
F012211Metagenome / Metatranscriptome282N
F034503Metagenome174Y
F040534Metagenome / Metatranscriptome161N

Sequences

Protein IDFamilyRBSSequence
Ga0255074_10008891F012211AGGAGMPTDEERFKYECWAIVQELDPEDIADSIVDSVALVEAIKANHAEDVASIVMKRVELKVRRRAELRVFDVVKTPWIDDIEELQHYRNLRIERVQKALDERKITAAKMDAPFKEMFDE
Ga0255074_10008892F009140GGAGMRLNQTHRTILKRLSGGPRSMLDMTHSATDNNAVSYHYAKYLPDLEQFGYVINHQEKWHLTEYGRMEMNRAISGAAMRIENGSVREPYDGKELRRNISRRGCYDFLKYPSRFGDNLFYHKGEQA
Ga0255074_10008894F040534AGGAGMNTDKSGEGRILSLSTLGEPMSEQEFEEKMDRGELDYEYAEYLMDHRSVGNGEILIRLMERNELYDDFKYHMTRSDK
Ga0255074_10008897F034503AGGMNKIEAHEILEQQKQGLAVSQYLVNRALVVSGDLGMACSPCQATWVEGPSMAQGQGIRELFYPFVARDNPGLNQPNEGTQ
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