NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255074_1001481

Scaffold Ga0255074_1001481


Overview

Basic Information
Taxon OID3300027121 Open in IMG/M
Scaffold IDGa0255074_1001481 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3532
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.1812Long. (o)-123.1834Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001229Metagenome / Metatranscriptome741Y
F001900Metagenome / Metatranscriptome620Y
F005054Metagenome / Metatranscriptome413Y
F007688Metagenome / Metatranscriptome346Y

Sequences

Protein IDFamilyRBSSequence
Ga0255074_10014813F005054N/AMAEILIRTQSPITHQIFWNGDISAPDSLPSVKLYDVTEDAAVSPSIAPTTLLETLTPYPDENNPGTYTVNIPYQYTDRNKTLQLKWQYSMSGVPVTRTDEVYVVTPYVDFNHVQDLGFSSDASDPGYKSYKELIRAERYARKQIEQHTGQNFYLYDDIYVVYGYDSDILPLPAKINTIHELYSRDVLLLDTINNIDNWSYPVEISETGYGIKINRAGIVDNTVYVANGMVPPSIHDYGSGIFQSGTPYKVQGRFGWEKVPDDVELAAIELMKDYFNKDTVWRNKYIKKISTFDWDFEYTGEAHTGTGNAYADKLLADYVLGTKVEII
Ga0255074_10014814F001229GAGMNDLIDSVLSMYLDVYKQTEVQDIDTGAIVREWSYYKTVACHAKGVISNSATTRSSDKQIFSNKYINDQVIQVRTSERLTPREKVTNIRDNDGNVIWHEINFPSETPTVFEVMGTTPVTDPFGRVIAYNSSMKRSENQQIGQ
Ga0255074_10014815F001900GGAMLIQASSGLERMMYANQNGPLKDSTVAQVSAFVYYEAAVIAKLTTNKAFQGAFTKIIFDQIDTDFGAYIDSLARTRPKSLHHMYEWKKTGNKSARLFKLNKISEQGLSFRINYEFLPSRSMVPAPKGKRRHMFINKAEVMEQGNPLVIRPKNAERLVFEYNGETVFMPKGASVTVKRPGGSGARNQFSLAHSRFFSGRLVNESIKRSGFQRIFNSSMTKALAVPSSIKKVQYSFSPNTIRSQADAALTLSFGGSM
Ga0255074_10014816F007688GGAGGVTANYKLDAMLELRKYLWDQLSSRNIFDEDDYWSDNLNENIVPIIPVQQVAEMNQFLSGKKHI

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