NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255074_1008225

Scaffold Ga0255074_1008225


Overview

Basic Information
Taxon OID3300027121 Open in IMG/M
Scaffold IDGa0255074_1008225 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1423
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.1812Long. (o)-123.1834Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019478Metagenome229Y
F024555Metagenome / Metatranscriptome205Y
F087181Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0255074_10082251F024555N/AMLTIVNIEKLYKLLVATWKVGKVVTLDSSYLIQLYKYNSMETMQVNIERTPIGEGDTALYELWFWEDNSGGAKPIRRLLRKCDFELGPLYVITNIENMMNLK
Ga0255074_10082252F087181N/AMSFEEIVFAMLMSGIVGLWIYAYIVSDIGSIRRILWDDTMLGWGWKKLFGDKKKAKQAPIPSFGHIPPPPAMPTAFNTSSLNVPHMNHIGKPLVIKNWDRLAGMTTMVFGRRWIVVQAFYASSYEFTLQTGGMTKSVTFSIYGDMYDSHRVSVYCQGRTEIMDVGICKDPNRLLKNLDNDIKDTQYE
Ga0255074_10082253F019478N/AMILKIHNTNRMVGTQFWNGRFTCLRVHETDTNYRFQFDDSEVPSRYVWIEVSKIGRIDNEGDWSYSLNYMRCNQHLVTAKWFENWKNVTKTFGDALKKQF
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