NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255074_1012327

Scaffold Ga0255074_1012327


Overview

Basic Information
Taxon OID3300027121 Open in IMG/M
Scaffold IDGa0255074_1012327 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1130
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.1812Long. (o)-123.1834Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007690Metagenome346Y
F038242Metagenome166N

Sequences

Protein IDFamilyRBSSequence
Ga0255074_10123272F038242N/AMLTIKNIKELELNFCHQRGLREITETQNKLSEQFYSFHFGPISDGMGWNKEIEVRLGRNLKGKDYEIFVMGLHLVTRHFVTIDDVKTKGGLASEISKVLAKAEHWWKTEATK
Ga0255074_10123273F007690AGGVDDIDKLNNMLTIKNILKLQGQPLVDGWETNNIYEGNHNDTYIFELVKRKPYPIHNQLCTIMLERTGHKIFGQDGLSYFFIYNSQRTNVCASADWLADKDNMIERLEYMIMNKENI
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Biomedical Sciences Research Center "Alexander Fleming"
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