NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255090_1000132

Scaffold Ga0255090_1000132


Overview

Basic Information
Taxon OID3300027123 Open in IMG/M
Scaffold IDGa0255090_1000132 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepA_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25085
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (78.26%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.1812Long. (o)-123.1834Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054682Metagenome139N
F086806Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0255090_100013231F086806AGGAGMSLHKELKELVTKIAPPRNILGGFMTRNDIIQLIEKVADEASLLGWIHAETMSRKRLENKILRLEQEVEILKGQLKDAELELIAVAAK
Ga0255090_100013244F054682AGGMSQMSFRGDGDKPPLVYKQEVCLLSLCLFVVFERKLKMVKSRLRKDVPKVEIKRYEPTTWDIQASAVLVELESRKEEHHQKWGCERLITLVDSEFRERFWGQMARVWDAIDHKDIERLRKAIAGMVKGYDHLEKWGEDNEINPSPTNIRFVEWKTQSGQIMAVTETINDCIDLQKLRKDLTIWTLEEFEAIINEPAIQFIIKAKAFDPTAQVKRFKAGDDFGKGSGFDDMVDDLEPIYGGGDAPKMFNLPPKRK
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