NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255090_1004451

Scaffold Ga0255090_1004451


Overview

Basic Information
Taxon OID3300027123 Open in IMG/M
Scaffold IDGa0255090_1004451 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepA_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3147
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.1812Long. (o)-123.1834Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012446Metagenome / Metatranscriptome280N
F015582Metagenome / Metatranscriptome253Y

Sequences

Protein IDFamilyRBSSequence
Ga0255090_10044512F012446N/AMKKLQKEFTGNYDKVGMNKFVQIKKENGVAIYQRFNTDGTPRSYEVFIVKVVPKGAPLPNGKTVEESYEQYPGANAFGKTAYDCRTIGQAEERFDQLVIKAKESAEAKEEAAKTGVRNRGRRGTNKQIKLDMTLNKGTKFTAKFLMSVLGVSQPVLFPILKQWEKEGTIKVNGSVKGEGKGRPATEYIVV
Ga0255090_10044513F015582N/AMPDIDPELQSEQLEDAKYLEELNHYVNTLSAPSAESVALYRAKLSMLEEIHAEIRAKYPGFMPEYDALSDPEYNQAVGKYQETTYSFSSRDLHSSSNS
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