NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255099_1023467

Scaffold Ga0255099_1023467


Overview

Basic Information
Taxon OID3300027128 Open in IMG/M
Scaffold IDGa0255099_1023467 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepA_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1094
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.1812Long. (o)-123.1834Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062744Metagenome / Metatranscriptome130N
F093852Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0255099_10234671F093852N/AMAKITVGNKEFTPPPINPPIEQVVETPKLSSLRKFTKKEIYVLVGVILTLLTIGFLPTQLVYKHRISKLEQQIDQIDPLNKVEMDLRRKLAKLEVDLKVDDDDLYKILSQMR
Ga0255099_10234674F062744N/AVVDFELDVPDESYVVVTHERKGLSKDLCGYALSCQRLTVYSSDHPKVGRFRRKPENIKAHFDNQEEFLDYSI

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