Scaffold Ga0255110_1000413

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0255110_1000413

Scaffold Ga0255110_1000413

Overview

Basic Information
Taxon OID	3300027132 Open in IMG/M
Scaffold ID	Ga0255110_1000413 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepC_8h
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11968
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (18.75%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	45.0061	Long. (^o)	-74.7949	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039135	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255110_10004135	F039135	N/A	MGKIKTYKQFKESLVIDLSFQGIEDLLESLTVWYDALLSAIGAEEVNIFDTLKLRQDDFSNKLDLDSLGDNVEFINSLSSIALKKSPIQNSDDFQTFLNKPCRFMFLYDINSNELENPIYIMMQVYNDTLSSWDNSKIYKIQDDVKKFYDKLTSRTIEIVDGDQNYIYTTSNGNNEWVLQNKDVENDVYKQTFRKEELEDLVKDRKIKINVI

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