NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255110_1023338

Scaffold Ga0255110_1023338


Overview

Basic Information
Taxon OID3300027132 Open in IMG/M
Scaffold IDGa0255110_1023338 Open in IMG/M
Source Dataset NameFreshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepC_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1068
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)45.0061Long. (o)-74.7949Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002398Metagenome / Metatranscriptome563Y
F002406Metagenome562Y
F019834Metagenome227N
F027179Metagenome195Y

Sequences

Protein IDFamilyRBSSequence
Ga0255110_10233381F002398AGGAMIAAISSIFFLLSSLDPIKNFVSLKTYISLNAQKHCQVYFIDENIPDFPRVNLIEKNRDAFFEYLDTIGIEHTQV
Ga0255110_10233383F027179N/AMADGLFLYKTDDSYVVKDQNDNILKQSKTYQTCSRYILKTLQSRRAAEREAIEEIN
Ga0255110_10233384F019834GAGGMKELKFTITGTIAVPDNAEYEYDFENQIYSFKIGDETYSLIAGLGTDEKEIIVTDEDFKKHDIAPVQYEDFYFEDXTYLYGXWIISI
Ga0255110_10233385F002406GGAMSDRLRDELSSEYDDETKDLIIRAFRNGLFQNPDIVEELKSSSLIESDYFEDEE
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