NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255069_1030967

Scaffold Ga0255069_1030967


Overview

Basic Information
Taxon OID3300027134 Open in IMG/M
Scaffold IDGa0255069_1030967 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)603
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.1812Long. (o)-123.1834Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035631Metagenome / Metatranscriptome171N
F070026Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0255069_10309671F035631N/AATEINALYNECGKALNIGNTNPSYPPGVTKQPSDYPSWPTGYWPTGYPFGTTTDYPSQYCHSDMTTDNFEFDSNTSLNPKSSKGINFIKDDMTTIKDNTIKDSANWRSSVQKALDKLSAKTNVTTNDGTKIR
Ga0255069_10309672F070026N/AMKQIYIEKLAEVPGGLPAIKMEEHIAGESQGDNYSIPVEYNLEGSLIYDIEVGKNVIVNRTKRNGEE

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