NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0255102_1003074

Scaffold Ga0255102_1003074


Overview

Basic Information
Taxon OID3300027144 Open in IMG/M
Scaffold IDGa0255102_1003074 Open in IMG/M
Source Dataset NameFreshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepA_0h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3935
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)45.0061Long. (o)-74.7949Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001561Metagenome / Metatranscriptome670Y
F008552Metagenome331Y

Sequences

Protein IDFamilyRBSSequence
Ga0255102_10030741F001561AGGAGVQSREQKLVYLRKTIETLWHGVSDTKEGDYPRIISLYKEVLMHDYHDADSWENMIWLMWSMAINKQDTVWLFQAEKFAKRYLSLNPNGYRAYEYLGQFYRIMYVDLKLAIRYYESAIRWKDAPKSTHHSLISVCEKSGDKIRAIGYCKMTL
Ga0255102_10030743F008552N/AMIISFEASANVDSTLFGYFSMEYDPEFFSDIRENLTDIPKNKPLAFKLDTDNVKLLQGAFHNIRRIICIPDVEKNKFTYVFKRNFESGTTKKFKYAKLHIDKDYFYFTGHHENLDGTKPVEFQSLNFDARFIDTIQNQYIKHQENMVN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.