NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0255102_1014165

Scaffold Ga0255102_1014165


Overview

Basic Information
Taxon OID3300027144 Open in IMG/M
Scaffold IDGa0255102_1014165 Open in IMG/M
Source Dataset NameFreshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepA_0h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1474
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)45.0061Long. (o)-74.7949Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006182Metagenome379Y
F010618Metagenome301N
F105155Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0255102_10141652F006182GAGGMKINFNVTGTMEIPDDVIKHYDVAGKLYALEFNDIMYMLQVCIVAEAGAGGWEILHQYEEMENHSITNVRYDDAEFSED
Ga0255102_10141653F105155N/AMYAMMMQNLVKISAAKQLAAEIKYLEWDQVTFNFYHKSYKGYDFYKRNISLNYWQYTVTSDITSCTFKVYEKRAKNAKLGNE
Ga0255102_10141655F010618GAGGMTLKDLILKLQELDKKYEQYSKDTEVVIAVHSKNEYNPEVSLDYIDEVLHPALDTYSGYICRIVLCGEFEQED
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.