NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255102_1041937

Scaffold Ga0255102_1041937


Overview

Basic Information
Taxon OID3300027144 Open in IMG/M
Scaffold IDGa0255102_1041937 Open in IMG/M
Source Dataset NameFreshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepA_0h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)749
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)45.0061Long. (o)-74.7949Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007798Metagenome / Metatranscriptome344Y
F019824Metagenome / Metatranscriptome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0255102_10419371F007798N/AELNLNIKNKMSTIDKPMLTQFVRDRDDQPRGMVVSTVIDGSVRFGWSYTNTKAGDRFNKKKAIIIATGRAEKGWGQKVKTPHRVNKALNQIVERSIRYYKGIPLVINAQ
Ga0255102_10419372F019824N/AMDKYITDNFTGSIDDLLNHCTNLDLDKVEAQVKVEEKEACIQIIMKEASCDESEANDIYNEILLTETKTTIDKMVADGLVYVSGHNEDGEPLFQLTELGKAVRNELGNNK
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