NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255078_1033155

Scaffold Ga0255078_1033155


Overview

Basic Information
Taxon OID3300027156 Open in IMG/M
Scaffold IDGa0255078_1033155 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1093
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.1812Long. (o)-123.1834Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006265Metagenome / Metatranscriptome377Y
F014501Metagenome / Metatranscriptome262Y

Sequences

Protein IDFamilyRBSSequence
Ga0255078_10331551F006265N/ADRVSGMDKSVDNIIFINNMSEDQVIYDRQDESSNVTDHNIRLIVQKYYTPQVDESSKGIILRFVPNRGNVLPEALVWFEKGKKGFLNKPLSQNVWMMVDCDLRPLHELLHKHFHLNEGDFNITRTTLSSMAYETISEWAKQS
Ga0255078_10331552F014501GGGGGMWSRESRLQPALYFFYKGLGIVKGMLYLCIVMMMKLIDSPTQIKRLNKIMKNKVITCGVKSFYFGDLQGYYSLHVKKGDEYTTPHLYLKFNITQCLFKRQYGDYGTYPIYRGHRRVRSINSSIIYSITHGGCHTFLKHFGIKNYELGRTKIVWPTQK
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