NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255204_1040694

Scaffold Ga0255204_1040694


Overview

Basic Information
Taxon OID3300027157 Open in IMG/M
Scaffold IDGa0255204_1040694 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Colum_RepC_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)874
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Louisiana
CoordinatesLat. (o)29.8571Long. (o)-89.9778Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059903Metagenome133Y
F062697Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0255204_10406942F062697GGAGGMSNTVPRLTINAVSLWDILDYMELRDEEVQAISDYGLSNVSWGDSMFTLIGNNFALDCIVNGLEAYYDELQMDADEYGQPSRSLPARIYTRKDITEMFWKVVDKDDYVDLETW
Ga0255204_10406944F059903GAGGMKSHFIDIVKLMESPSSRSPWYVVEGSKGKHYVSALGGRAAKGLREGTELKLYRNEGKQMSAYILSR

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