NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209897_1008913

Scaffold Ga0209897_1008913


Overview

Basic Information
Taxon OID3300027169 Open in IMG/M
Scaffold IDGa0209897_1008913 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_10_20 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1335
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002479Metagenome / Metatranscriptome555Y
F027592Metagenome / Metatranscriptome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0209897_10089131F027592N/AMRALLLATLWVHLASGVLLVGAFSMLLLAGQPRAATPRRWDQTLVRGSPLLVLVALGSGVVWLLLRTAVFENRPQAALEPRAVWHAVLDTWPGLVWLARHGLLIVLGAFLAMRASI
Ga0209897_10089133F002479N/AIWITHKQPNGEWTKAQSLNINTPAIEHCFMPLGLPGADDTSVFVSIRPREAGAAPTADLYTTRMEKGVWQSARRYESKLLDSIGLKCRLNAVSKDGLVLGVVSVHDFGKFHTMQFVHYDPASREWKGPIVPAPFNNPAIDGACPMFTAGGDKMIWSAGYDRGPGPVSTSGGTGSTYDLFWLNTSDLVAYYKAKAGLS
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