NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207948_1000374

Scaffold Ga0207948_1000374


Overview

Basic Information
Taxon OID3300027174 Open in IMG/M
Scaffold IDGa0207948_1000374 Open in IMG/M
Source Dataset NameForest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF040 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4142
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location
Location NameHarvard Forest LTER, Petersham, MA, USA
CoordinatesLat. (o)42.550409Long. (o)-72.180244Alt. (m)Depth (m)0 to .1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030178Metagenome / Metatranscriptome186Y
F105571Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0207948_10003743F030178GGAGGMARSREIVAACLVSCLLMTPVWGASAGPLGTVVSSDRATIGGAGAAVGTTIFDGDKLSTADLGSVQLRTGAARFLLSASSVATVNEAGGMPGATLLRGSATFSTANEKAFTLNALTAVIKPKSDEPTIGQATVLGEKQLLVKCTRGALTITVGDDSRVIPEGSAYRIVLSPSPEEAQDQPPPQGVGAKGSGRPPLMAAKSKFVWYATAAVAIATFFAVQEALESPDRP
Ga0207948_10003745F105571N/AGSKVFLWTRSQEDSALLHQSADALARAIQTYDATFGARSKKPQPFWIVECPVSAGCFAAAESSYANLLSAEPRAISSELASLDTLLIDFSGGAPKLAAAAPGLAASWLGYGQNPGFYEQQPPLSALPAFASALGQEAIDGPSSRIETIRRALRIIPKSAVAHKPEEESVQRAKSFLFFYALQERCGPEAFRRAINHMLSARQGRGFDLDDLIAAFEEETHQNVAEFVRLWMKRPGVPAEFRTRYEDASASIAITSKETMP
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Institute for Fundamental Biomedical Research
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